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PAS_chr4_0649 UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p [ Komagataella phaffii GS115 ]

Gene ID: 8201356, updated on 25-Jan-2024

Summary

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Gene symbol
PAS_chr4_0649
Gene description
UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p
Locus tag
PAS_chr4_0649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0649 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1259848..1261377)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Low affinity vacuolar membrane localized monovalent cation/H+ antiporter Neighboring gene Spermine synthase, required for the biosynthesis of spermine Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1259848..1261377
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494041.1 → XP_002494086.1  UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494086.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R8I2, F2QYL3
    Conserved Domains (3) summary
    cd14353
    Location:9 → 41
    UBA_FAF; UBA-like domain found in FAS-associated factor FAF1, FAF2 and similar proteins
    cl00388
    Location:209 → 294
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    cl25424
    Location:410 → 507
    TGS; The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information ...
Nucleotide Protein
Heading Accession and Version

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