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PAS_chr4_0638 Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex [ Komagataella phaffii GS115 ]

Gene ID: 8201347, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0638
Gene description
Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex
Locus tag
PAS_chr4_0638
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0638 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1243881..1244558, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein Neighboring gene Essential protein required for sister chromatid cohesion in mitosis and meiosis

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1243881..1244558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494032.1 → XP_002494077.1  Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494077.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R8H3, F2QYM2
    Conserved Domains (1) summary
    pfam00808
    Location:14 → 78
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nucleotide Protein
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