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PAS_chr4_0616 Hypothetical protein [ Komagataella phaffii GS115 ]

Gene ID: 8201325, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0616
Gene description
Hypothetical protein
Locus tag
PAS_chr4_0616
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0616 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1198264..1199352, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family Neighboring gene Hypothetical protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1198264..1199352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494010.1 → XP_002494055.1  Hypothetical protein PAS_chr4_0616 [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494055.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R8F1, F2QYP5
    Conserved Domains (3) summary
    COG5171
    Location:159 → 299
    YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
    cl17171
    Location:241 → 362
    PH-like; Pleckstrin homology-like domain
    cl25574
    Location:1 → 215
    TOP2c; TopoisomeraseII
Nucleotide Protein
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