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PAS_chr4_0878 Silenced copy of ALPHA2 at HML [ Komagataella phaffii GS115 ]

Gene ID: 8201276, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0878
Gene description
Silenced copy of ALPHA2 at HML
Locus tag
PAS_chr4_0878
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0878 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1648150..1648635)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Mitochondrial dicarboxylate carrier, integral membrane protein Neighboring gene uncharacterized protein Neighboring gene Transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Silenced copy of ALPHA2 at HML

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1648150..1648635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494282.1 → XP_002494327.1  Silenced copy of ALPHA2 at HML [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494327.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1G4KQP8, C4R973
    Conserved Domains (1) summary
    cl00084
    Location:103 → 141
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
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