U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PAS_chr4_0813 mitochondrial 37S ribosomal protein YmS18 [ Komagataella phaffii GS115 ]

Gene ID: 8201215, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
PAS_chr4_0813
Gene description
mitochondrial 37S ribosomal protein YmS18
Locus tag
PAS_chr4_0813
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PAS_chr4_0813 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1537219..1537860)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Vacuolar membrane protein of unknown function involved in vacuolar protein sorting Neighboring gene Protein serine/threonine/tyrosine (dual-specificity) kinase Neighboring gene 60S ribosomal protein L25 Neighboring gene Mitochondrial malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
mitochondrial 37S ribosomal protein YmS18

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1537219..1537860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494218.1 → XP_002494263.1  mitochondrial 37S ribosomal protein YmS18 [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494263.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R909, F2QY35
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials