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PAS_chr4_0118 DNA repair and TFIIH regulator [ Komagataella phaffii GS115 ]

Gene ID: 8201204, updated on 19-Jun-2024

Summary

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Gene symbol
PAS_chr4_0118
Gene description
DNA repair and TFIIH regulator
Locus tag
PAS_chr4_0118
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0118 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (228154..231180, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Protein involved in N-glycosylation Neighboring gene Hypothetical protein Neighboring gene Protein involved in cell morphogenesis and proliferation, associated with protein kinase Cbk1p Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation by iron-sulfur cluster transfer IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic [4Fe-4S] assembly targeting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair and TFIIH regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    228154..231180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493478.1 → XP_002493523.1  DNA repair and TFIIH regulator [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493523.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R6W9, F2R072
    Conserved Domains (2) summary
    pfam12460
    Location:515 → 939
    MMS19_C; RNAPII transcription regulator C-terminal
    pfam14500
    Location:42 → 297
    MMS19_N; Dos2-interacting transcription regulator of RNA-Pol-II
Nucleotide Protein
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