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PAS_chr4_0083 Splicing factor that is found in the Cef1p subcomplex of the spliceosome [ Komagataella phaffii GS115 ]

Gene ID: 8201170, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0083
Gene description
Splicing factor that is found in the Cef1p subcomplex of the spliceosome
Locus tag
PAS_chr4_0083
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0083 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (161176..162534)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Riboflavin synthase Neighboring gene Essential protein involved in a late step of 60S ribosomal subunit assembly or modification Neighboring gene Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) Neighboring gene Activator of the phosphotyrosyl phosphatase activity of PP2A,peptidyl-prolyl cis/trans-isomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Splicing factor that is found in the Cef1p subcomplex of the spliceosome

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    161176..162534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493443.1 → XP_002493488.1  Splicing factor that is found in the Cef1p subcomplex of the spliceosome [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493488.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R6T4, F2R0A7
    Conserved Domains (2) summary
    cd00200
    Location:133 → 429
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:145 → 181
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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