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PAS_chr4_0055 Protoporphyrinogen oxidase [ Komagataella phaffii GS115 ]

Gene ID: 8201145, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0055
Gene description
Protoporphyrinogen oxidase
Locus tag
PAS_chr4_0055
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0055 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (114813..116495, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen-dependent protoporphyrinogen oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protoporphyrinogen oxidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    114813..116495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493416.1 → XP_002493461.1  Protoporphyrinogen oxidase [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493461.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R6Q7, F2R0D3
    Conserved Domains (1) summary
    TIGR00562
    Location:7 → 558
    proto_IX_ox; protoporphyrinogen oxidase
Nucleotide Protein
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Gene LinkOut

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