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PAS_chr4_0047 Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles [ Komagataella phaffii GS115 ]

Gene ID: 8201138, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0047
Gene description
Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles
Locus tag
PAS_chr4_0047
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0047 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (100931..101815, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Mitochondrial outer membrane and cell wall localized SUN family member Neighboring gene Intracellular beta-1,3-endoglucanase, expression is induced during sporulation Neighboring gene Mitochondrial protein, putative inner membrane transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein catabolic process in the vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    100931..101815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493409.1 → XP_002493454.1  Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493454.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R6Q0, F2R0E0
    Conserved Domains (1) summary
    pfam09783
    Location:109 → 281
    Vac_ImportDeg; Vacuolar import and degradation protein
Nucleotide Protein
Heading Accession and Version

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