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PAS_chr4_0386 Gamma subunit of the translation initiation factor eIF2B [ Komagataella phaffii GS115 ]

Gene ID: 8200670, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0386
Gene description
Gamma subunit of the translation initiation factor eIF2B
Locus tag
PAS_chr4_0386
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0386 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (773857..775206, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein Neighboring gene One of six ATPases of the 19S regulatory particle of the 26S proteasome Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoplasmic translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 2B complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of guanyl-nucleotide exchange factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Gamma subunit of the translation initiation factor eIF2B

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    773857..775206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493768.1 → XP_002493813.1  Gamma subunit of the translation initiation factor eIF2B [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493813.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R7Q9, F2QZD5
    Conserved Domains (2) summary
    cd04652
    Location:311 → 388
    LbH_eIF2B_gamma_C; eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is ...
    cl11394
    Location:3 → 222
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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