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PAS_chr4_0796 Nuclear protein related to mammalian high mobility group (HMG) proteins [ Komagataella phaffii GS115 ]

Gene ID: 8200574, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0796
Gene description
Nuclear protein related to mammalian high mobility group (HMG) proteins
Locus tag
PAS_chr4_0796
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0796 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1509755..1510219, complement)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Peroxisomal membrane peroxin that is a central component of the peroxisomal protein import machinery Neighboring gene Homoaconitase, catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lys Neighboring gene Hypothetical protein Neighboring gene Essential beta-coat protein of the COPI coatomer

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Nuclear protein related to mammalian high mobility group (HMG) proteins

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1509755..1510219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494199.1 → XP_002494244.1  Nuclear protein related to mammalian high mobility group (HMG) proteins [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494244.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R8Z0
    Conserved Domains (1) summary
    pfam01248
    Location:38 → 128
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Nucleotide Protein
Heading Accession and Version

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