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Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819862, updated on 18-Sep-2024

Summary

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Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT3G06770
Locus tag
AT3G06770
See related
Araport:AT3G06770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (2134773..2137641, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Drought-responsive family protein Neighboring gene miscRNA Neighboring gene Chaperone DnaJ-domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337676.1
NM_001337677.1
NM_111557.2
NM_180194.3
NM_180195.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_566292.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7; Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
NP_850525.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.2); Has 3304 Blast hits to 3296 proteins in 440 species: Archae - 6; Bacteria - 1354; Metazoa - 7; Fungi - 623; Plants - 1207; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
NP_850526.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7; Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2134773..2137641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180194.3 → NP_850525.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850525.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEE1, A0A384L8B6, A0A5S9X9T2, Q8RWK6
    Conserved Domains (1) summary
    COG5434
    Location:43 → 355
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

  2. NM_180195.2 → NP_850526.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850526.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8LAH2, Q9M7Y3
    Conserved Domains (1) summary
    COG5434
    Location:4 → 286
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

  3. NM_001337676.1 → NP_001326102.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEB5, A0A1I9LN93, A0A384LCL6, Q8LAH2
    Conserved Domains (1) summary
    COG5434
    Location:37 → 268
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

  4. NM_001337677.1 → NP_001326103.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN94, A0A5S9X9T2

  5. NM_111557.2 → NP_566292.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566292.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8LAH2, Q9M7Y3
    Conserved Domains (1) summary
    COG5434
    Location:4 → 286
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
Nucleotide Protein
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