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Pdzk1ip1 PDZK1 interacting protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81916, updated on 2-Nov-2024

Summary

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Official Symbol
Pdzk1ip1provided by RGD
Official Full Name
PDZK1 interacting protein 1provided by RGD
Primary source
RGD:620952
See related
EnsemblRapid:ENSRNOG00000008161 AllianceGenome:RGD:620952
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Dd96; Map17
Summary
Predicted to be located in membrane. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 1154.1) See more
Orthologs
human mouse all
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Genomic context

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See Pdzk1ip1 in Genome Data Viewer
Location:
5q35
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (133841586..133859894)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (128618050..128623131)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (133895849..133900720)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene STIL, centriolar assembly protein Neighboring gene TAL bHLH transcription factor 1, erythroid differentiation factor Neighboring gene uncharacterized LOC120102952 Neighboring gene transfer RNA proline (anticodon AGG) 66 Neighboring gene cytochrome P450, family 4, subfamily x, polypeptide 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Rat kidney MAP17 induces cotransport of Na-mannose and Na-glucose in Xenopus laevis oocytes. Blasco T, et al. Am J Physiol Renal Physiol, 2003 Oct. PMID 12812916
  2. Rapid isolation of tissue-specific genes from rat kidney. Hu E, et al. Exp Nephrol, 2001 Mar-Apr. PMID 11150865
  3. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PDZK1-interacting protein 1
Names
17 kDa membrane-associated protein
membrane-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130401.1 → NP_569085.1  PDZK1-interacting protein 1

    See identical proteins and their annotated locations for NP_569085.1

    Status: PROVISIONAL

    Source sequence(s)
    AF402772
    UniProtKB/Swiss-Prot
    Q923S2
    UniProtKB/TrEMBL
    A6JZ32
    Conserved Domains (1) summary
    pfam15807
    Location:15 → 114
    MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    133841586..133859894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110842.2 → XP_038966770.2  PDZK1-interacting protein 1 isoform X1

    Related
    ENSRNOP00000011434.3, ENSRNOT00000011434.5

  2. XM_039110844.1 → XP_038966772.1  PDZK1-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A6JZ34
    Conserved Domains (1) summary
    pfam15807
    Location:1 → 84
    MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q923S2.1 GenPept UniProtKB/Swiss-Prot:Q923S2

Gene LinkOut

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