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BPM3 BTB/POZ/MATH-domains containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818561, updated on 18-Sep-2024

Summary

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Official Symbol
BPM3
Official Full Name
BTB/POZ/MATH-domains containing protein
Primary source
TAIR:AT2G39760
Locus tag
AT2G39760
See related
Araport:AT2G39760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATBPM3; T5I7.6; T5I7_6
Summary
Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).
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Genomic context

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See BPM3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (16583003..16586260)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene rubisco activase Neighboring gene Nucleotidyltransferase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Glucose-1-phosphate adenylyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases. Chen L, et al. Mol Plant, 2014 Oct 24. PMID 25343985
  2. MATH/BTB CRL3 receptors target the homeodomain-leucine zipper ATHB6 to modulate abscisic acid signaling. Lechner E, et al. Dev Cell, 2011 Dec 13. PMID 22172674
  3. Arabidopsis AtCUL3a and AtCUL3b form complexes with members of the BTB/POZ-MATH protein family. Weber H, et al. Plant Physiol, 2005 Jan. PMID 15618422, Free PMC Article
  4. Identification of Arabidopsis MYB56 as a novel substrate for CRL3(BPM) E3 ligases. Chen L, et al. Mol Plant, 2015 Feb. PMID 25618823
  5. Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family. Weber H, et al. FEBS J, 2009 Nov. PMID 19843165

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036439.2
NM_001336795.1
NM_001336796.1
NM_129534.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of protein ubiquitination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to osmotic stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BTB/POZ/MATH-domains containing protein
NP_001031516.1
  • BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_030522.1
  • BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16583003..16586260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036439.2 → NP_001031516.1  BTB/POZ/MATH-domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031516.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZP7
    Conserved Domains (4) summary
    smart00225
    Location:195 → 303
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd00121
    Location:25 → 158
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cd14736
    Location:303 → 338
    SPOP_C_like_plant; BACK-like Domain C-terminal to BTB in plant proteins similar to speckle-type POZ protein (SPOP)
    pfam00651
    Location:184 → 300
    BTB; BTB/POZ domain

  2. NM_001336795.1 → NP_001324349.1  BTB/POZ/MATH-domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZP7, A0A1P8AZW8

  3. NM_129534.4 → NP_030522.1  BTB/POZ/MATH-domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_030522.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22286, Q2V416, Q8L977
    UniProtKB/TrEMBL
    A0A178W0L2, A0A5S9X5M7, A0A654F1P1
    Conserved Domains (3) summary
    cd00121
    Location:25 → 158
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cd18280
    Location:180 → 300
    BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
    cd14736
    Location:300 → 363
    BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family

  4. NM_001336796.1 → NP_001324348.1  BTB/POZ/MATH-domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZP7, A0A1P8AZW8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22286.1

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