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Gpank1 G patch domain and ankyrin repeats 1 [ Mus musculus (house mouse) ]

Gene ID: 81845, updated on 28-Oct-2024

Summary

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Official Symbol
Gpank1provided by MGI
Official Full Name
G patch domain and ankyrin repeats 1provided by MGI
Primary source
MGI:MGI:2148975
See related
Ensembl:ENSMUSG00000092417 AllianceGenome:MGI:2148975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G5; Bat4; Bat-4; D17H6S54E
Summary
Predicted to enable nucleic acid binding activity. Is expressed in blastocyst; central nervous system; gut; male reproductive gland or organ; and sensory organ. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in testis adult (RPKM 21.0), spleen adult (RPKM 7.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Gpank1 in Genome Data Viewer
Location:
17 B1; 17 18.59 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35340472..35343791)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35121448..35124815)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member G5C Neighboring gene lymphocyte antigen 6 family member G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene predicted gene 20522 Neighboring gene DNA segment, Chr 17, human D6S53E Neighboring gene apolipoprotein M

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. New microsatellite size variants as markers for a cross-over hotspot in the C4-H-2D region. Snoek M, et al. Mamm Genome, 1994 Mar. PMID 8199408
  2. Localization of the casein kinase II beta-subunit gene within the mouse H-2 complex class III region and comparison of expression with Bat genes. Lanning D, et al. Mamm Genome, 1997 Jul. PMID 9196000
  3. Protein NPM3 interacts with the multifunctional nucleolar protein B23/nucleophosmin and inhibits ribosome biogenesis. Huang N, et al. J Biol Chem, 2005 Feb 18. PMID 15596447
  4. PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Lafuse WP, et al. Immunogenetics, 1992. PMID 1351875
  5. A physical map of the mouse H2 Bat5/Db interval. Dagenais SL, et al. Mamm Genome, 1997 Jan. PMID 9021146

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
G patch domain and ankyrin repeat-containing protein 1
Names
G patch domain and ankyrin repeats-containing protein 1
HLA-B associated transcript 4
protein BAT4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128597.2 → NP_001122069.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001122069.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a distinct 5' UTR and lacks a segment of the 5' coding region, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    CR974444
    Consensus CDS
    CCDS50084.1
    UniProtKB/TrEMBL
    Q6PES3
    Related
    ENSMUSP00000133240.3, ENSMUST00000165306.3
    Conserved Domains (3) summary
    sd00045
    Location:99 → 131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248 → 290
    G-patch; G-patch domain
    pfam12796
    Location:99 → 186
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001410200.1 → NP_001397129.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3

  3. NM_001410201.1 → NP_001397130.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3

  4. NM_001410202.1 → NP_001397131.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3

  5. NM_001410203.1 → NP_001397132.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3

  6. NM_001410204.1 → NP_001397133.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3

  7. NM_032460.2 → NP_115849.2  G patch domain and ankyrin repeat-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_115849.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC120637, BY606764
    Consensus CDS
    CCDS28685.1
    UniProtKB/Swiss-Prot
    Q0VBG8, Q61858, Q9R065
    Related
    ENSMUSP00000056646.9, ENSMUST00000052167.9
    Conserved Domains (3) summary
    sd00045
    Location:122 → 154
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:271 → 313
    G-patch; G-patch domain
    pfam12796
    Location:122 → 209
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35340472..35343791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525182.4 → XP_006525245.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006525245.1

    UniProtKB/TrEMBL
    Q6PES3
    Conserved Domains (3) summary
    sd00045
    Location:99 → 131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248 → 290
    G-patch; G-patch domain
    pfam12796
    Location:99 → 186
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_030250157.1 → XP_030106017.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q0VBG8, Q61858, Q9R065
    Conserved Domains (3) summary
    sd00045
    Location:122 → 154
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:271 → 313
    G-patch; G-patch domain
    pfam12796
    Location:122 → 209
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_006525184.1 → XP_006525247.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006525247.1

    UniProtKB/TrEMBL
    Q6PES3
    Conserved Domains (3) summary
    sd00045
    Location:99 → 131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248 → 290
    G-patch; G-patch domain
    pfam12796
    Location:99 → 186
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q61858.2 GenPept UniProtKB/Swiss-Prot:Q61858

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