U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

XEG113 xyloglucanase 113 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818128, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
XEG113
Official Full Name
xyloglucanase 113
Primary source
TAIR:AT2G35610
Locus tag
AT2G35610
See related
Araport:AT2G35610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GT77; T20F21.19; T20F21_19; xyloglucanase 113
Summary
Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See XEG113 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (14947343..14951372, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene BREVIS RADIX-like 1 Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene copper amine oxidase family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification of plant cell wall mutants by means of a forward chemical genetic approach using hydrolases. Gille S, et al. Proc Natl Acad Sci U S A, 2009 Aug 25. PMID 19667208, Free PMC Article
  2. O-glycosylated cell wall proteins are essential in root hair growth. Velasquez SM, et al. Science, 2011 Jun 17. PMID 21680836
  3. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  4. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_179919.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables arabinosyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell wall pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein glycosylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within root hair cell development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in endosome HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
xyloglucanase 113
NP_850250.1
  • xyloglucanase 113 (XEG113); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G70630.1); Has 390 Blast hits to 386 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14947343..14951372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179919.2 → NP_850250.1  xyloglucanase 113 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850250.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFT3, Q8VXZ5, Q9ZQN4
    UniProtKB/TrEMBL
    A0A178W347, A0A5S9X472, A0A654F9S2
    Conserved Domains (1) summary
    pfam03407
    Location:159 → 383
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VXZ5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools