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EDA3 DnaJ/Hsp40 cysteine-rich domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818051, updated on 7-Sep-2023

Summary

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Gene symbol
EDA3
Gene description
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Primary source
Araport:AT2G34860
Locus tag
AT2G34860
See related
TAIR:AT2G34860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo sac development arrest 3; F19I3.9; F19I3_9; PSA2
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Genomic context

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See EDA3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (14708243..14710267)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Coatomer epsilon subunit Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nuclear Localization of the DnaJ-Like Zinc Finger Domain-Containing Protein EDA3 Affects Seed Development in Arabidopsis thaliana. Kong MJ, et al. Int J Mol Sci, 2020 Oct 27. PMID 33121105, Free PMC Article
  2. The DnaJ-Like Zinc Finger Domain Protein PSA2 Affects Light Acclimation and Chloroplast Development in Arabidopsis thaliana. Wang YW, et al. Front Plant Sci, 2016. PMID 27047527, Free PMC Article
  3. A thylakoid membrane protein harboring a DnaJ-type zinc finger domain is required for photosystem I accumulation in plants. Fristedt R, et al. J Biol Chem, 2014 Oct 31. PMID 25228689, Free PMC Article
  4. Identification of potential targets for thylakoid oxidoreductase AtVKOR/LTO1 in chloroplasts. Lu Y, et al. Protein Pept Lett, 2014. PMID 25412899
  5. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Nuclear Localization of the DnaJ-Like Zinc Finger Domain-Containing Protein EDA3 Affects Seed Development in Arabidopsis thaliana.
    Title: The Nuclear Localization of the DnaJ-Like Zinc Finger Domain-Containing Protein EDA3 Affects Seed Development in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084535.1
NM_129039.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within megagametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photosystem I assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within thylakoid membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DnaJ/Hsp40 cysteine-rich domain superfamily protein
NP_001078004.1
  • embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
NP_181032.1
  • embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14708243..14710267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129039.4 → NP_181032.1  DnaJ/Hsp40 cysteine-rich domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181032.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64750
    UniProtKB/TrEMBL
    A0A5S9X3Z9, A0A654EYX3
    Conserved Domains (1) summary
    PRK14298
    Location:102 → 157
    PRK14298; chaperone protein DnaJ; Provisional

  2. NM_001084535.1 → NP_001078004.1  DnaJ/Hsp40 cysteine-rich domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078004.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64750
    UniProtKB/TrEMBL
    A0A5S9X3Z9, A0A654EYX3
    Conserved Domains (1) summary
    PRK14298
    Location:102 → 157
    PRK14298; chaperone protein DnaJ; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64750.1

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