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EMB3147 EMBRYO DEFECTIVE 3147 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817570, updated on 18-Sep-2024

Summary

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Official Symbol
EMB3147
Official Full Name
EMBRYO DEFECTIVE 3147
Primary source
TAIR:AT2G30200
Locus tag
AT2G30200
See related
Araport:AT2G30200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 3147; T27E13.6; T27E13_6
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Genomic context

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See EMB3147 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (12882948..12885776, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene ncRNA Neighboring gene laccase 3 Neighboring gene GDSL-like Lipase/Acylhydrolase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plastidial and Mitochondrial Malonyl CoA-ACP Malonyltransferase is Essential for Cell Division and Its Overexpression Increases Storage Oil Content. Jung SH, et al. Plant Cell Physiol, 2019 Jun 1. PMID 30796840
  2. Dual-Localized Enzymatic Components Constitute the Fatty Acid Synthase Systems in Mitochondria and Plastids. Guan X, et al. Plant Physiol, 2020 Jun. PMID 32245791, Free PMC Article
  3. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
  4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
  5. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The plastidial and mitochondrial MCAMT is essential for Arabidopsis cell division and is a novel genetic resource useful for enhancing storage oil content in oilseed crops. [MCAMT]
    Title: Plastidial and Mitochondrial Malonyl CoA-ACP Malonyltransferase is Essential for Cell Division and Its Overexpression Increases Storage Oil Content.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_128573.4
NM_201835.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables [acyl-carrier-protein] S-malonyltransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in peroxisome HDA PubMed 

General protein information

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Preferred Names
EMBRYO DEFECTIVE 3147
NP_565697.1
  • catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding; FUNCTIONS IN: binding, transferase activity, [acyl-carrier-protein] S-malonyltransferase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Malonyl CoA-acyl carrier protein transacylase (InterPro:IPR004410), Acyl transferase domain (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 16466 Blast hits to 15045 proteins in 2783 species: Archae - 4; Bacteria - 12057; Metazoa - 203; Fungi - 1221; Plants - 66; Viruses - 0; Other Eukaryotes - 2915 (source: NCBI BLink).
NP_973564.2
  • catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding; FUNCTIONS IN: binding, transferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Acyl transferase domain (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 15695 Blast hits to 14359 proteins in 2779 species: Archae - 4; Bacteria - 11793; Metazoa - 195; Fungi - 1104; Plants - 63; Viruses - 0; Other Eukaryotes - 2536 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12882948..12885776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128573.4 → NP_565697.1  EMBRYO DEFECTIVE 3147 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565697.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X2M9, A0A654EYK5, Q8RU07
    Conserved Domains (1) summary
    PLN02752
    Location:50 → 393
    PLN02752; [acyl-carrier protein] S-malonyltransferase

  2. NM_201835.2 → NP_973564.2  EMBRYO DEFECTIVE 3147 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973564.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X2M9, A0A654EYK5, F4IMR0
    Conserved Domains (1) summary
    PLN02752
    Location:50 → 368
    PLN02752; [acyl-carrier protein] S-malonyltransferase
Nucleotide Protein
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