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AMP-dependent synthetase and ligase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816272, updated on 18-Sep-2024

Summary

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Official Full Name
AMP-dependent synthetase and ligase family protein
Primary source
TAIR:AT2G17650
Locus tag
AT2G17650
See related
Araport:AT2G17650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T17A5.12; T17A5_12
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (7670878..7673152)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene Trimeric LpxA-like enzymes superfamily protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene DUF241 domain protein, putative (DUF241)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_127319.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AMP-dependent synthetase and ligase family protein
NP_179356.1
  • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 73858 Blast hits to 68450 proteins in 3463 species: Archae - 1190; Bacteria - 48268; Metazoa - 3206; Fungi - 2755; Plants - 2089; Viruses - 1; Other Eukaryotes - 16349 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7670878..7673152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127319.4 → NP_179356.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179356.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SEY5
    UniProtKB/TrEMBL
    A0A654EV97, A0A7G2EBC5
    Conserved Domains (1) summary
    cd12118
    Location:58 → 595
    ttLC_FACS_AEE21_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SEY5.1

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