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Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816270, updated on 18-Sep-2024

Summary

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Official Full Name
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Primary source
TAIR:AT2G17630
Locus tag
AT2G17630
See related
Araport:AT2G17630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
phosphoserine aminotransferase 2; PSAT2; T19E12.3; T19E12_3
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (7666548..7668065)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Cyclin B2;1 Neighboring gene Trimeric LpxA-like enzymes superfamily protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_127317.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-phospho-L-serine:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 

General protein information

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Preferred Names
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NP_179354.1
  • Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Aminotransferase class-V pyridoxal-phosphate binding site (InterPro:IPR020578), Phosphoserine aminotransferase, subgroup (InterPro:IPR003248), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Phosphoserine aminotransferase (InterPro:IPR022278); BEST Arabidopsis thaliana protein match is: phosphoserine aminotransferase (TAIR:AT4G35630.1); Has 5143 Blast hits to 5141 proteins in 1794 species: Archae - 74; Bacteria - 3425; Metazoa - 166; Fungi - 141; Plants - 61; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7666548..7668065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127317.5 → NP_179354.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179354.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPU8, Q9SHP0
    UniProtKB/TrEMBL
    A0A5S9WYV3
    Conserved Domains (2) summary
    PLN02452
    Location:56 → 422
    PLN02452; phosphoserine transaminase
    COG1932
    Location:62 → 422
    SerC; Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SHP0.1

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