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phox domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816086, updated on 18-Sep-2024

Summary

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Official Full Name
phox domain-containing protein
Primary source
TAIR:AT2G15900
Locus tag
AT2G15900
See related
Araport:AT2G15900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19G14.10; F19G14_10
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (6927024..6932791)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene maternal effect embryo arrest 14 Neighboring gene ncRNA Neighboring gene CSL zinc finger domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_127150.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phox domain-containing protein
NP_179190.3
  • Phox-associated domain;Phox-like;Sorting nexin, C-terminal; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT1G15240.2); Has 1078 Blast hits to 871 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 658; Fungi - 203; Plants - 141; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    6927024..6932791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127150.5 → NP_179190.3  phox domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179190.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNL5, A0A5S9WYB0, F4IJE1
    Conserved Domains (3) summary
    cd06872
    Location:513 → 619
    PX_SNX19_like_plant; The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins
    pfam02194
    Location:105 → 286
    PXA; PXA domain
    pfam08628
    Location:815 → 957
    Nexin_C; Sorting nexin C terminal
Nucleotide Protein
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