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NUDT5 nudix hydrolase homolog 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814983, updated on 6-Oct-2023

Summary

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Gene symbol
NUDT5
Gene description
nudix hydrolase homolog 5
Primary source
Araport:AT2G04430
Locus tag
AT2G04430
See related
TAIR:AT2G04430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
atnudt5; nudix hydrolase homolog 5; T1O3.16; T1O3_16
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Genomic context

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See NUDT5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (1538472..1541375)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene low-molecular-weight cysteine-rich 82 Neighboring gene MutT/nudix family protein Neighboring gene nudix hydrolase homolog 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana. Ogawa T, et al. J Biol Chem, 2005 Jul 1. PMID 15878881
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_126476.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
nudix hydrolase homolog 5
NP_178524.2
  • nudix hydrolase homolog 5 (NUDT5); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 6 (TAIR:AT2G04450.1); Has 2931 Blast hits to 2929 proteins in 813 species: Archae - 33; Bacteria - 1829; Metazoa - 186; Fungi - 19; Plants - 157; Viruses - 14; Other Eukaryotes - 693 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1538472..1541375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335236.1 → NP_001324657.1  nudix hydrolase homolog 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNV9, A0A1P8B0R5, A0A5S9WX42
    Conserved Domains (2) summary
    pfam18290
    Location:11 → 91
    Nudix_hydro; Nudix hydrolase domain
    cl00447
    Location:104 → 238
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  2. NM_126476.3 → NP_178524.2  nudix hydrolase homolog 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178524.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IV87, Q6NNG2, Q9SJC6
    UniProtKB/TrEMBL
    A0A178VNV9
    Conserved Domains (1) summary
    cl00447
    Location:123 → 257
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJC6.3

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