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PF3D7_0300200 rifin [ Plasmodium falciparum 3D7 ]

Gene ID: 814322, updated on 17-May-2024

Summary

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Gene symbol
PF3D7_0300200
Gene description
rifin
Locus tag
PF3D7_0300200
See related
PlasmoDB:PF3D7_0300200; VEuPathDB:PF3D7_0300200
Gene type
protein coding
RNA name
rifin
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
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Genomic context

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See PF3D7_0300200 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_000521.4 (46369..47579, complement)

Chromosome 3 - NC_000521.4Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein 1, PfEMP1 Neighboring gene pseudo Neighboring gene stevor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000521.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RIFINs are adhesins implicated in severe Plasmodium falciparum malaria. Goel S, et al. Nat Med, 2015 Apr. PMID 25751816
  2. Rifins: a second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum. Kyes SA, et al. Proc Natl Acad Sci U S A, 1999 Aug 3. PMID 10430943, Free PMC Article
  3. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. Bowman S, et al. Nature, 1999 Aug 5. PMID 10448855
  4. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Process Evidence Code Pubs
acts_upstream_of_or_within adhesion of symbiont to microvasculature IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within antigenic variation TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within modulation by symbiont of host erythrocyte aggregation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Maurer's cleft IDA
Inferred from Direct Assay
more info
 PubMed 
located_in host cell plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in symbiont-containing vacuole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
rifin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000521.4 Reference assembly

    Range
    46369..47579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001351045.1 → XP_001351081.1  rifin [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001351081.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2I0BTH1, O97325
    Conserved Domains (1) summary
    PTZ00046
    Location:1 → 326
    PTZ00046; rifin; Provisional
Nucleotide Protein
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