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PF3D7_1006100 CCR4-NOT transcription complex subunit 5, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 810220, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_1006100
Gene description
CCR4-NOT transcription complex subunit 5, putative
Locus tag
PF3D7_1006100
See related
PlasmoDB:PF3D7_1006100; VEuPathDB:PF3D7_1006100
Gene type
protein coding
RNA name
CCR4-NOT transcription complex subunit 5, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_1006100 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Sequence:
Chromosome: 10; NC_037281.1 (259060..260304, complement)

Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene conserved protein, unknown function Neighboring gene IMP1-like protein, putative Neighboring gene DNA/RNA-binding protein Alba 3 Neighboring gene conserved Plasmodium protein, unknown function

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037281.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex. Hart KJ, et al. PLoS Pathog, 2019 Jan. PMID 30703164, Free PMC Article
  2. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Component Evidence Code Pubs
part_of CCR4-NOT complex ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 5, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037281.1 Reference assembly

    Range
    259060..260304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024473275.1 → XP_024329086.1  CCR4-NOT transcription complex subunit 5, putative [Plasmodium falciparum 3D7]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0L1I4J2, A0A143ZX72, A0A2I0BRB9
    Conserved Domains (1) summary
    COG5665
    Location:53 → 174
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Nucleotide Protein
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