U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8079235 alpha-1,4-glucan-protein synthase [UDP-forming] [ Sorghum bicolor (sorghum) ]

Gene ID: 8079235, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8079235
Gene description
alpha-1,4-glucan-protein synthase [UDP-forming]
Locus tag
SORBI_3003G304600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8079235 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (63484539..63486103, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM50 Neighboring gene uncharacterized LOC8079234 Neighboring gene uncharacterized protein C9orf85 homolog Neighboring gene RHOMBOID-like protein 12, mitochondrial

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-1,4-glucan-protein synthase [UDP-forming]

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    63484539..63486103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002458490.2 → XP_002458535.1  alpha-1,4-glucan-protein synthase [UDP-forming]

    See identical proteins and their annotated locations for XP_002458535.1

    UniProtKB/TrEMBL
    A0A921RFQ9, C5XKU8
    Conserved Domains (1) summary
    PLN03180
    Location:1 → 341
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials