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LOC8076609 cellulose synthase A catalytic subunit 7 [UDP-forming] [ Sorghum bicolor (sorghum) ]

Gene ID: 8076609, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8076609
Gene description
cellulose synthase A catalytic subunit 7 [UDP-forming]
Locus tag
SORBI_3001G224300
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8076609 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (21485581..21489668, complement)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene acyl-[acyl-carrier-protein] desaturase 7, chloroplastic Neighboring gene nucleolin 2 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene eukaryotic translation initiation factor Neighboring gene peroxisome biogenesis protein 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 7 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    21485581..21489668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002467064.2 → XP_002467109.1  cellulose synthase A catalytic subunit 7 [UDP-forming]

    See identical proteins and their annotated locations for XP_002467109.1

    UniProtKB/TrEMBL
    A0A921RZL8, C5WZC2
    Conserved Domains (4) summary
    PLN02915
    Location:1 → 1058
    PLN02915; cellulose synthase A [UDP-forming], catalytic subunit
    pfam14569
    Location:8 → 73
    zf-UDP; Zinc-binding RING-finger
    cl00785
    Location:834 → 1041
    DUF70; Protein of unknown function DUF70
    cl11394
    Location:457 → 575
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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