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LOC8075565 mannan endo-1,4-beta-mannosidase 2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8075565, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8075565
Gene description
mannan endo-1,4-beta-mannosidase 2
Locus tag
SORBI_3003G293800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8075565 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (62632040..62634988, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 88A1-like Neighboring gene uncharacterized LOC110434153 Neighboring gene uncharacterized LOC8075566 Neighboring gene serine/threonine-protein kinase HT1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    62632040..62634988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002458433.2 → XP_002458478.1  mannan endo-1,4-beta-mannosidase 2

    See identical proteins and their annotated locations for XP_002458478.1

    UniProtKB/TrEMBL
    A0A921RIF8, C5XK18
    Conserved Domains (1) summary
    COG3934
    Location:66 → 364
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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