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LOC8068285 probable xyloglucan endotransglucosylase/hydrolase protein 30 [ Sorghum bicolor (sorghum) ]

Gene ID: 8068285, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8068285
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 30
Locus tag
SORBI_3004G025900
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8068285 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (2068232..2069966)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g71210 Neighboring gene ribose-phosphate pyrophosphokinase 1, chloroplastic Neighboring gene ankyrin repeat domain-containing protein EMB506, chloroplastic Neighboring gene tRNA (guanine-N(7)-)-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    2068232..2069966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002451413.2 → XP_002451458.1  probable xyloglucan endotransglucosylase/hydrolase protein 30

    See identical proteins and their annotated locations for XP_002451458.1

    UniProtKB/TrEMBL
    A0A921R1C4, C5XTQ9
    Conserved Domains (1) summary
    cd02176
    Location:43 → 314
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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