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LOC8036228 queuine tRNA-ribosyltransferase accessory subunit 2 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8036228, updated on 31-Jul-2024

Summary

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Gene symbol
LOC8036228
Gene description
queuine tRNA-ribosyltransferase accessory subunit 2
See related
VectorBase:ISCP_011841; EnsemblRapid:LOC8036228
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
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Genomic context

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See LOC8036228 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609857.1 (94660825..94662724)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024389302.1 (485789..487687)

NW_024609857.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115324092 Neighboring gene structural maintenance of chromosomes 4-like protein gluon Neighboring gene quinone oxidoreductase-like protein 1 Neighboring gene moesin/ezrin/radixin homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA-guanosine(34) queuine transglycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA-guanine transglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
queuine tRNA-ribosyltransferase accessory subunit 2
Names
Queuine tRNA-ribosyltransferase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609857.1 Reference ASM1692078v2

    Range
    94660825..94662724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002411739.5 → XP_002411784.4  queuine tRNA-ribosyltransferase accessory subunit 2

    UniProtKB/Swiss-Prot
    B7Q5K1
    Related
    XP_002411784.4, XM_002411739.5
    Conserved Domains (1) summary
    pfam01702
    Location:13 → 381
    TGT; Queuine tRNA-ribosyltransferase
Nucleotide Protein
Heading Accession and Version

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