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zc3h12a zinc finger CCCH-type containing 12A [ Danio rerio (zebrafish) ]

Gene ID: 798235, updated on 12-Sep-2024

Summary

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Gene symbol
zc3h12a
Gene description
zinc finger CCCH-type containing 12A
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See zc3h12a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (3982587..4003107)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 3 Neighboring gene uncharacterized LOC137487870 Neighboring gene uncharacterized LOC556653 Neighboring gene uncharacterized protein DDB_G0271670

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007127.7 Chromosome 16 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
endoribonuclease ZC3H12A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    3982587..4003107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466808.2 → XP_021322483.1  endoribonuclease ZC3H12A

    UniProtKB/TrEMBL
    A0A8M9P842
    Conserved Domains (2) summary
    pfam00642
    Location:273 → 295
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam11977
    Location:105 → 261
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
Nucleotide Protein
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