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si:dkey-56m19.5 si:dkey-56m19.5 [ Danio rerio (zebrafish) ]

Gene ID: 797705, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-56m19.5provided by ZNC
Official Full Name
si:dkey-56m19.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-226
See related
Ensembl:ENSDARG00000068432 AllianceGenome:ZFIN:ZDB-GENE-030131-226
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb913; fb17g07; fd60a06; im:7000443; wu:fb17g07; wu:fd60a06
Summary
Is expressed in several structures, including intermediate cell mass of mesoderm; nervous system; neural tube; notochord; and pronephric duct. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-56m19.5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (44713135..44717498)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (44373821..44378273)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 4 Neighboring gene uncharacterized LOC103911411 Neighboring gene dynein, cytoplasmic 1, light intermediate chain 2 Neighboring gene uncharacterized LOC108190699 Neighboring gene nedd8 activating enzyme E1 subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia. Issaka Salia O, et al. BMC Genomics, 2020 Dec 7. PMID 33287696, Free PMC Article
  2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
calphotin; uncharacterized protein LOC797705

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    44713135..44717498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477943.2 → XP_021333618.1  calphotin

    UniProtKB/TrEMBL
    A0A140LG11, A0A8M1RHC9
    Related
    ENSDARP00000142188.1, ENSDART00000170721.3
    Conserved Domains (1) summary
    cl26557
    Location:84 → 257
    RNase_E_G; Ribonuclease E/G family

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394706.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    206466..210829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002662871.5 → XP_002662917.1  calphotin

    UniProtKB/TrEMBL
    A0A140LG11, A0A8M1RHC9
    Conserved Domains (1) summary
    cl26557
    Location:84 → 257
    RNase_E_G; Ribonuclease E/G family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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