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rab35a RAB35, member RAS oncogene family a [ Danio rerio (zebrafish) ]

Gene ID: 796454, updated on 2-Nov-2024

Summary

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Official Symbol
rab35aprovided by ZNC
Official Full Name
RAB35, member RAS oncogene family aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-131030-1
See related
Ensembl:ENSDARG00000102078 AllianceGenome:ZFIN:ZDB-GENE-131030-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rab35
Summary
Predicted to enable GTP binding activity and GTPase activity. Is expressed in telencephalon. Orthologous to human RAB35 (RAB35, member RAS oncogene family). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See rab35a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (2651632..2676325, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (2486003..2510698)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495508 Neighboring gene carbonic anhydrase IV a Neighboring gene myotubularin related protein 4 Neighboring gene uncharacterized LOC103910293 Neighboring gene citron rho-interacting serine/threonine kinase a Neighboring gene guanine nucleotide binding protein (G protein), gamma 10 Neighboring gene Rab9 effector protein with kelch motifs

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rab8, Rab11, and Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development. Aljiboury AA, et al. PLoS Genet, 2023 May. PMID 37186603, Free PMC Article
  2. A plasmid library of full-length zebrafish rab proteins for in vivo cell biology. Hall TE, et al. Cell Logist, 2017. PMID 28396820, Free PMC Article
  3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rab8, Rab11, and Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development.
    Title: Rab8, Rab11, and Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ras-related protein Rab-35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386745.1 → NP_001373674.1  ras-related protein Rab-35

    Status: VALIDATED

    Source sequence(s)
    CABZ01072548, CABZ01072549
    UniProtKB/TrEMBL
    A0A0G2L264, A0A8M1PRX4
    Related
    ENSDARP00000138829.1, ENSDART00000159661.2
    Conserved Domains (1) summary
    cl38936
    Location:3 → 176
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    2651632..2676325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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