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si:ch211-202f5.3 si:ch211-202f5.3 [ Danio rerio (zebrafish) ]

Gene ID: 795321, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-202f5.3provided by ZNC
Official Full Name
si:ch211-202f5.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1042
See related
Ensembl:ENSDARG00000092998 AllianceGenome:ZFIN:ZDB-GENE-030131-1042
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb57g11; wu:fb57g11
Orthologs
all
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Genomic context

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See si:ch211-202f5.3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (57480138..57483926)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (56809802..56813702)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490177 Neighboring gene pre-mRNA splicing tri-snRNP complex factor PRPF4 Neighboring gene ring finger protein 224 Neighboring gene phosphatidylserine decarboxylase Neighboring gene uncharacterized LOC101882464

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein si:ch211-202f5.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    57480138..57483926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476645.2 → XP_021332320.1  uncharacterized protein si:ch211-202f5.3

    UniProtKB/TrEMBL
    A0A0R4IEV6, A0A8M9QEW8
    Related
    ENSDARP00000131759.1, ENSDART00000135520.4

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395247.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    90086..95031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003198691.6 → XP_003198739.2  uncharacterized protein si:ch211-202f5.3

    UniProtKB/TrEMBL
    A0A2R8Q1Q7, A0A8M1RLZ1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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