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ccdc178 coiled-coil domain containing 178 [ Danio rerio (zebrafish) ]

Gene ID: 794803, updated on 17-Sep-2024

Summary

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Gene symbol
ccdc178
Gene description
coiled-coil domain containing 178
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See ccdc178 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (35787605..35847728)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (35899448..35959672)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene dystrobrevin, alpha Neighboring gene kelch-like family member 14 Neighboring gene ATP-binding cassette, sub-family D (ALD), member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 178
Names
coiled-coil domain-containing protein 178-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    35787605..35847728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001334790.8 → XP_001334826.3  coiled-coil domain-containing protein 178 isoform X1

    UniProtKB/TrEMBL
    A0A8M1Q728
    Conserved Domains (2) summary
    TIGR02168
    Location:340 → 668
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:165 → 491
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. XM_021470380.2 → XP_021326055.1  coiled-coil domain-containing protein 178 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PY28
    Conserved Domains (1) summary
    cl25732
    Location:340 → 668
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021470382.2 → XP_021326057.1  coiled-coil domain-containing protein 178 isoform X3

    UniProtKB/TrEMBL
    A0A8M9P683
    Conserved Domains (1) summary
    cl25732
    Location:238 → 566
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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