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susd2 sushi domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 793335, updated on 2-Nov-2024

Summary

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Official Symbol
susd2provided by ZNC
Official Full Name
sushi domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-080225-20
See related
Ensembl:ENSDARG00000101452 AllianceGenome:ZFIN:ZDB-GENE-080225-20
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7156467
Summary
Predicted to be located in membrane. Is expressed in myotome; pancreas; and pancreatic bud. Orthologous to human SUSD2 (sushi domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See susd2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (16275053..16351633, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (15880916..15903160)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene coenzyme Q5, methyltransferase Neighboring gene kringle containing transmembrane protein 1 Neighboring gene solute carrier family 39 member 14 Neighboring gene piwi-like RNA-mediated gene silencing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sushi domain containing 2; sushi domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    16275053..16351633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221409.1 → XP_068077510.1  sushi domain-containing protein 2

    Related
    ENSDARP00000141875.2, ENSDART00000168643.2
Nucleotide Protein Strain
Heading Accession and Version

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