gabarapb GABA(A) receptor-associated protein b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gabarapbprovided by ZNC
Official Full Name: GABA(A) receptor-associated protein bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-101102-9
See related: Ensembl:ENSDARG00000052082 AllianceGenome:ZFIN:ZDB-GENE-101102-9
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gabarap
Summary: Acts upstream of or within head development. Predicted to be located in membrane. Is expressed in brainstem; cerebellum; eye; optic tectum; and telencephalon. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (69470147..69477814)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (69232097..69239764)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagy	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within head development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within head development	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: GABA(A) receptor-associated protein b; gamma-aminobutyric acid receptor-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386387.1 → NP_001373316.1 GABA(A) receptor-associated protein b

Status: VALIDATED

Source sequence(s)

CU651672, CU693476

Conserved Domains (1) summary

cd17232
Location:2 → 116

Ubl_ATG8_GABARAP; ubiquitin-like (Ubl) domain found in gamma-aminobutyric acid receptor-associated protein (GABARAP)