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stbd1 starch binding domain 1 [ Danio rerio (zebrafish) ]

Gene ID: 792854, updated on 2-Nov-2024

Summary

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Official Symbol
stbd1provided by ZNC
Official Full Name
starch binding domain 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-120817-2
See related
Ensembl:ENSDARG00000098408 AllianceGenome:ZFIN:ZDB-GENE-120817-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable glycogen binding activity and starch binding activity. Predicted to be active in membrane. Orthologous to human STBD1 (starch binding domain 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See stbd1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (5589997..5607253)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (5483015..5496415)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488778 Neighboring gene uncharacterized LOC137488777 Neighboring gene urokinase plasminogen activator surface receptor-like Neighboring gene shroom family member 3 Neighboring gene cyclin I Neighboring gene cyclin G2 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I subunit C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycogen binding IEA
Inferred from Electronic Annotation
more info
  
enables starch binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
starch-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    5589997..5607253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001332437.7 → XP_001332473.1  starch-binding domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PYN9
    Conserved Domains (1) summary
    cd05813
    Location:437 → 533
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...

  2. XM_005161488.5 → XP_005161545.1  starch-binding domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0R4ITF0, A0A8M2B8F6
    Related
    ENSDARP00000138158.1, ENSDART00000160885.2
    Conserved Domains (1) summary
    cd05813
    Location:436 → 532
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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