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nfkbie nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon [ Danio rerio (zebrafish) ]

Gene ID: 790944, updated on 18-Sep-2024

Summary

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Official Symbol
nfkbieprovided by ZNC
Official Full Name
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilonprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061215-132
See related
Ensembl:ENSDARG00000068367 AllianceGenome:ZFIN:ZDB-GENE-061215-132
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158276
Summary
Orthologous to human NFKBIE (NFKB inhibitor epsilon). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See nfkbie in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (51274296..51307815, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (51461164..51494683, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 90, alpha (cytosolic), class B member 1 Neighboring gene solute carrier family 35 member B2 Neighboring gene transmembrane protein 151Ba Neighboring gene t-complex-associated-testis-expressed 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The Aryl Hydrocarbon Receptor Pathway Defines the Time Frame for Restorative Neurogenesis. Di Giaimo R, et al. Cell Rep, 2018 Dec 18. PMID 30566853
  2. Silica nanoparticles trigger hepatic lipid-metabolism disorder in vivo and in vitro. Duan J, et al. Int J Nanomedicine, 2018. PMID 30519016, Free PMC Article
  3. A zebrafish model of granulin deficiency reveals essential roles in myeloid cell differentiation. Campbell CA, et al. Blood Adv, 2021 Feb 9. PMID 33560393, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
NF-kappa-B inhibitor epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080089.1 → NP_001073558.1  NF-kappa-B inhibitor epsilon

    See identical proteins and their annotated locations for NP_001073558.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128831
    UniProtKB/TrEMBL
    A1A5V8
    Related
    ENSDARP00000089603.3, ENSDART00000098833.5
    Conserved Domains (3) summary
    cd00204
    Location:166 → 295
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:213 → 306
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:208 → 239
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    51274296..51307815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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