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SH2D5 SH2 domain containing 5 [ Bos taurus (domestic cattle) ]

Gene ID: 789769, updated on 10-Oct-2024

Summary

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Official Symbol
SH2D5provided by VGNC
Official Full Name
SH2 domain containing 5provided by VGNC
Primary source
VGNC:VGNC:50133
See related
Ensembl:ENSBTAG00000001082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SH2D5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (131900257..131916114)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene uncharacterized LOC112443421 Neighboring gene heterochromatin protein 1 binding protein 3 Neighboring gene uncharacterized LOC132343568 Neighboring gene kinesin family member 17 Neighboring gene uncharacterized LOC112443422 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH2 domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191255.1 → NP_001178184.1  SH2 domain-containing protein 5

    See identical proteins and their annotated locations for NP_001178184.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000002
    UniProtKB/TrEMBL
    A0A3Q1M9G0, E1BA40
    Related
    ENSBTAP00000001431.5, ENSBTAT00000001431.7
    Conserved Domains (2) summary
    cd00173
    Location:301 → 377
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:23 → 150
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    131900257..131916114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877355.1 → XP_059733338.1  SH2 domain-containing protein 5 isoform X4

  2. XM_059877350.1 → XP_059733333.1  SH2 domain-containing protein 5 isoform X1

  3. XM_059877352.1 → XP_059733335.1  SH2 domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0AAA9S8M0
    Related
    ENSBTAP00000081615.1, ENSBTAT00000107765.1

  4. XM_059877353.1 → XP_059733336.1  SH2 domain-containing protein 5 isoform X3

  5. XM_059877356.1 → XP_059733339.1  SH2 domain-containing protein 5 isoform X5

    Related
    ENSBTAP00000065081.2, ENSBTAT00000069596.2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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