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Spata2l spermatogenesis associated 2-like [ Mus musculus (house mouse) ]

Gene ID: 78779, updated on 2-Nov-2024

Summary

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Official Symbol
Spata2lprovided by MGI
Official Full Name
spermatogenesis associated 2-likeprovided by MGI
Primary source
MGI:MGI:1926029
See related
Ensembl:ENSMUSG00000033594 AllianceGenome:MGI:1926029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610039E05Rik
Summary
Predicted to be active in cytoplasm. Orthologous to human SPATA2L (spermatogenesis associated 2 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis adult (RPKM 15.5), adrenal adult (RPKM 14.5) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See Spata2l in Genome Data Viewer
Location:
8 E1; 8 72.09 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123958994..123962997, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (123232255..123236263, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S12, pseudogene 9 Neighboring gene charged multivesicular body protein 1A Neighboring gene spermatogenesis associated 33 Neighboring gene RIKEN cDNA 4933417D19 gene Neighboring gene cyclin dependent kinase 10 Neighboring gene VPS9 domain containing 1 Neighboring gene zinc finger protein (C2H2 type) 276 Neighboring gene Fanconi anemia, complementation group A Neighboring gene STARR-positive B cell enhancer ABC_E8971

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. ACAA2 is a ligand-dependent coactivator for thyroid hormone receptor β1. Wang W, et al. Biochem Biophys Res Commun, 2021 Oct 22. PMID 34474245, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA4138

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 2-like protein
Names
SPATA2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357300.1 → NP_001344229.1  spermatogenesis-associated protein 2-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC163617
    Consensus CDS
    CCDS22752.1
    UniProtKB/Swiss-Prot
    Q3UTL5, Q5DTL7, Q8BNN1
    UniProtKB/TrEMBL
    B2RTE8
    Related
    ENSMUSP00000130306.2, ENSMUST00000166768.3

  2. NM_001357301.1 → NP_001344230.1  spermatogenesis-associated protein 2-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC163617
    Consensus CDS
    CCDS22752.1
    UniProtKB/Swiss-Prot
    Q3UTL5, Q5DTL7, Q8BNN1
    UniProtKB/TrEMBL
    B2RTE8

  3. NM_001357302.1 → NP_001344231.1  spermatogenesis-associated protein 2-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC163617

  4. NM_030176.3 → NP_084452.2  spermatogenesis-associated protein 2-like protein isoform 1

    See identical proteins and their annotated locations for NP_084452.2

    Status: VALIDATED

    Source sequence(s)
    AC163617, AK081234, AW123302
    Consensus CDS
    CCDS22752.1
    UniProtKB/Swiss-Prot
    Q3UTL5, Q5DTL7, Q8BNN1
    UniProtKB/TrEMBL
    B2RTE8
    Related
    ENSMUSP00000095932.2, ENSMUST00000098327.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    123958994..123962997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531504.5 → XP_006531567.1  spermatogenesis-associated protein 2-like protein isoform X1

    See identical proteins and their annotated locations for XP_006531567.1

    UniProtKB/Swiss-Prot
    Q3UTL5, Q5DTL7, Q8BNN1
    UniProtKB/TrEMBL
    B2RTE8

  2. XM_006531506.2 → XP_006531569.1  spermatogenesis-associated protein 2-like protein isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BNN1.1 GenPept UniProtKB/Swiss-Prot:Q8BNN1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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