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RTL6 retrotransposon Gag like 6 [ Bos taurus (domestic cattle) ]

Gene ID: 786696, updated on 10-Oct-2024

Summary

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Official Symbol
RTL6provided by VGNC
Official Full Name
retrotransposon Gag like 6provided by VGNC
Primary source
VGNC:VGNC:34201
See related
BGD:BT20209; Ensembl:ENSBTAG00000056562
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
LDOC1L
Orthologs
human mouse all
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Genomic context

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See RTL6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (115127428..115133740, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene parvin gamma Neighboring gene shisa like 1 Neighboring gene uncharacterized LOC132345369 Neighboring gene proline rich 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein LDOC1L; retrotransposon Gag-like protein 6
Names
LDOC1 like
leucine zipper down-regulated in cancer 1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    115127428..115133740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059887195.1 → XP_059743178.1  retrotransposon Gag-like protein 6

    UniProtKB/TrEMBL
    A0AAA9TB56

  2. XM_015471441.3 → XP_015326927.1  retrotransposon Gag-like protein 6

    UniProtKB/TrEMBL
    A0AAA9TB56, E1B809
    Related
    ENSBTAP00000040227.4, ENSBTAT00000016488.7
    Conserved Domains (1) summary
    pfam16297
    Location:98 → 177
    DUF4939; Domain of unknown function (DUF4939)

  3. XM_059887194.1 → XP_059743177.1  retrotransposon Gag-like protein 6

    UniProtKB/TrEMBL
    A0AAA9TB56
    Related
    ENSBTAP00000103599.1, ENSBTAT00000125775.1
Nucleotide Protein Strain
Heading Accession and Version

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