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BCOR BCL6 corepressor [ Bos taurus (domestic cattle) ]

Gene ID: 784529, updated on 4-Oct-2024

Summary

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Official Symbol
BCORprovided by VGNC
Official Full Name
BCL6 corepressorprovided by VGNC
Primary source
VGNC:VGNC:56520
See related
BGD:BT20889; Ensembl:ENSBTAG00000047339
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See BCOR in Genome Data Viewer
Location:
chromosome: X
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (103315576..103434640)

Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344333 Neighboring gene uncharacterized LOC101905248 Neighboring gene uncharacterized LOC132344335 Neighboring gene uncharacterized LOC132344334 Neighboring gene uncharacterized LOC101905296 Neighboring gene uncharacterized LOC132344336

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL-6 corepressor
Names
BCL6 co-repressor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191544.3 → NP_001178473.3  BCL-6 corepressor

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000030
    UniProtKB/TrEMBL
    G3X8E4
    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    103315576..103434640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024988315.2 → XP_024844083.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_005228295.5 → XP_005228352.2  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_005228296.5 → XP_005228353.2  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_059883572.1 → XP_059739555.1  BCL-6 corepressor isoform X1

  5. XM_024988314.2 → XP_024844082.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  6. XM_024988322.2 → XP_024844090.1  BCL-6 corepressor isoform X3

    Conserved Domains (5) summary
    cd00204
    Location:1426 → 1534
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1608 → 1723
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1432 → 1463
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1171 → 1383
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  7. XM_024988323.2 → XP_024844091.1  BCL-6 corepressor isoform X5

    Conserved Domains (5) summary
    cd00204
    Location:1408 → 1516
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1590 → 1705
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1414 → 1445
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1153 → 1365
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  8. XM_024988316.2 → XP_024844084.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  9. XM_024988320.2 → XP_024844088.1  BCL-6 corepressor isoform X2

    UniProtKB/TrEMBL
    G3X8E4
    Related
    ENSBTAP00000055662.2, ENSBTAT00000065036.3
    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  10. XM_024988324.2 → XP_024844092.1  BCL-6 corepressor isoform X6

    Conserved Domains (5) summary
    cd00204
    Location:1426 → 1534
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1608 → 1723
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1432 → 1463
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1171 → 1383
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  11. XM_059883573.1 → XP_059739556.1  BCL-6 corepressor isoform X4

  12. XM_024988325.2 → XP_024844093.1  BCL-6 corepressor isoform X7

    Conserved Domains (5) summary
    cd00204
    Location:1408 → 1516
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1590 → 1705
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1414 → 1445
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1153 → 1365
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  13. XM_024988317.2 → XP_024844085.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  14. XM_059883574.1 → XP_059739557.1  BCL-6 corepressor isoform X7

  15. XM_024988318.2 → XP_024844086.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:1460 → 1568
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14261
    Location:1642 → 1757
    PUFD; PCGF Ub-like fold discriminator of BCOR
    sd00045
    Location:1466 → 1497
    ANK; ANK repeat [structural motif]
    pfam15808
    Location:1205 → 1417
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    cl25496
    Location:257 → 673
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  16. XM_059883571.1 → XP_059739554.1  BCL-6 corepressor isoform X1

  17. XM_059883570.1 → XP_059739553.1  BCL-6 corepressor isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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