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6720468P15Rik RIKEN cDNA 6720468P15 gene [ Mus musculus (house mouse) ]

Gene ID: 78073, updated on 17-Aug-2024

Summary

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Official Symbol
6720468P15Rikprovided by MGI
Official Full Name
RIKEN cDNA 6720468P15 geneprovided by MGI
Primary source
MGI:MGI:1925323
See related
Ensembl:ENSMUSG00000117655 AllianceGenome:MGI:1925323
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 1.7), stomach adult (RPKM 1.1) and 9 other tissues See more
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Genomic context

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See 6720468P15Rik in Genome Data Viewer
Location:
19 D2; 19 52.44 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (57496996..57501220)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (57508564..57512788)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2600017C09 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:57486570-57486679 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:57506098-57506303 Neighboring gene predicted gene, 41874 Neighboring gene TruB pseudouridine (psi) synthase family member 1 Neighboring gene STARR-seq mESC enhancer starr_46555 Neighboring gene predicted gene, 32932 Neighboring gene STARR-seq mESC enhancer starr_46556 Neighboring gene STARR-positive B cell enhancer mm9_chr19:57717570-57717871 Neighboring gene STARR-positive B cell enhancer mm9_chr19:57729589-57729890 Neighboring gene STARR-seq mESC enhancer starr_46558 Neighboring gene attractin like 1 Neighboring gene STARR-seq mESC enhancer starr_46561 Neighboring gene STARR-seq mESC enhancer starr_46562 Neighboring gene STARR-seq mESC enhancer starr_46563 Neighboring gene predicted gene, 52385

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040306.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC140413, AK040090, AK078497
    Related
    ENSMUST00000235008.2

  2. NR_040307.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' exon compared to variant 1.
    Source sequence(s)
    AC140413

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    57496996..57501220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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