U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

mrtfb myocardin related transcription factor B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780107, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
mrtfbprovided by Xenbase
Official Full Name
myocardin related transcription factor Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-487634
See related
Ensembl:ENSXETG00000010993 AllianceGenome:Xenbase:XB-GENE-487634
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mkl2; MRTF-B; npd001
Summary
Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Orthologous to human MRTFB (myocardin related transcription factor B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See mrtfb in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (35558291..35746044)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (32383183..32574344, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116407690 Neighboring gene excision repair cross-complementation group 4 Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene uncharacterized LOC116407672 Neighboring gene microRNA mir-193

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC145857

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
myocardin-related transcription factor B
Names
MKL/myocardin-like 2
MKL1/myocardin like 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079182.1 → NP_001072650.1  myocardin-related transcription factor B

    See identical proteins and their annotated locations for NP_001072650.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123933
    UniProtKB/TrEMBL
    A0A803KHK0, F6UAT7, Q08D56
    Related
    ENSXETP00000024057.4, ENSXETT00000024057.5
    Conserved Domains (4) summary
    smart00707
    Location:39 → 64
    RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
    cd00187
    Location:544 → 586
    TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
    pfam02037
    Location:382 → 415
    SAP; SAP domain
    pfam02755
    Location:129 → 149
    RPEL; RPEL repeat

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    35558291..35746044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970561.3 → XP_012826015.1  myocardin-related transcription factor B isoform X1

    UniProtKB/TrEMBL
    A0A6I8RTA4, A0A6I8SUD3
    Related
    ENSXETP00000085963.1, ENSXETT00000075638.2
    Conserved Domains (5) summary
    PHA03247
    Location:693 → 936
    PHA03247; large tegument protein UL36; Provisional
    pfam02037
    Location:394 → 427
    SAP; SAP domain
    pfam02755
    Location:141 → 163
    RPEL; RPEL repeat
    cl27170
    Location:563 → 602
    DUF460; Protein of unknown function (DUF460)
    cl29414
    Location:52 → 76
    RPEL; RPEL repeat

  2. XM_031892741.1 → XP_031748601.1  myocardin-related transcription factor B isoform X2

    UniProtKB/TrEMBL
    A0A6I8SUD3, A0A6I8T2P5
    Related
    ENSXETP00000101564.2, ENSXETT00000074228.2
    Conserved Domains (5) summary
    PRK10263
    Location:737 → 879
    PRK10263; DNA translocase FtsK; Provisional
    pfam02037
    Location:394 → 427
    SAP; SAP domain
    pfam02755
    Location:141 → 163
    RPEL; RPEL repeat
    cl27170
    Location:563 → 602
    DUF460; Protein of unknown function (DUF460)
    cl29414
    Location:52 → 76
    RPEL; RPEL repeat

  3. XM_031892742.1 → XP_031748602.1  myocardin-related transcription factor B isoform X3

    UniProtKB/TrEMBL
    A0A6I8RN18, A0A6I8SUD3
    Related
    ENSXETP00000086540.2, ENSXETT00000094851.2
    Conserved Domains (5) summary
    PHA03247
    Location:639 → 882
    PHA03247; large tegument protein UL36; Provisional
    pfam02037
    Location:340 → 373
    SAP; SAP domain
    pfam02755
    Location:96 → 117
    RPEL; RPEL repeat
    cl27170
    Location:509 → 548
    DUF460; Protein of unknown function (DUF460)
    cl29414
    Location:52 → 76
    RPEL; RPEL repeat

  4. XM_031892740.1 → XP_031748600.1  myocardin-related transcription factor B isoform X1

    UniProtKB/TrEMBL
    A0A6I8RTA4, A0A6I8SUD3
    Conserved Domains (5) summary
    PHA03247
    Location:693 → 936
    PHA03247; large tegument protein UL36; Provisional
    pfam02037
    Location:394 → 427
    SAP; SAP domain
    pfam02755
    Location:141 → 163
    RPEL; RPEL repeat
    cl27170
    Location:563 → 602
    DUF460; Protein of unknown function (DUF460)
    cl29414
    Location:52 → 76
    RPEL; RPEL repeat

  5. XM_018097150.2 → XP_017952639.1  myocardin-related transcription factor B isoform X1

    UniProtKB/TrEMBL
    A0A6I8RTA4, A0A6I8SUD3
    Conserved Domains (5) summary
    PHA03247
    Location:693 → 936
    PHA03247; large tegument protein UL36; Provisional
    pfam02037
    Location:394 → 427
    SAP; SAP domain
    pfam02755
    Location:141 → 163
    RPEL; RPEL repeat
    cl27170
    Location:563 → 602
    DUF460; Protein of unknown function (DUF460)
    cl29414
    Location:52 → 76
    RPEL; RPEL repeat
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.