U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780065, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
aglprovided by Xenbase
Official Full Name
amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-1001429
See related
Ensembl:ENSXETG00000013185 AllianceGenome:Xenbase:XB-GENE-1001429
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gde; xagl
Summary
Predicted to enable 4-alpha-glucanotransferase activity and amylo-alpha-1,6-glucosidase activity. Predicted to act upstream of or within glycogen biosynthetic process and glycogen catabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease III. Orthologous to human AGL (amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See agl in Genome Data Viewer
Location:
chromosome: 4
Exon count:
37
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (108486093..108539477)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (98403989..98469544)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene pre-B-cell leukemia homeobox 1 Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene putative ferric-chelate reductase 1 Neighboring gene putative ferric-chelate reductase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC146500

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables amylo-alpha-1,6-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase; glycogen debranching enzyme
Names
6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)
amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)
amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    108486093..108539477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901015.1 → XP_031756875.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A6I8PYN9, F7D922
    Related
    ENSXETP00000097426.2, ENSXETT00000076880.2
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye

  2. XM_031901016.1 → XP_031756876.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A6I8PYN9, F7D922
    Related
    ENSXETP00000028868.5, ENSXETT00000028868.5
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye

  3. XM_031901017.1 → XP_031756877.1  glycogen debranching enzyme isoform X2

    UniProtKB/TrEMBL
    A0A6I8PYN9, A0A6I8SDS9
    Related
    ENSXETP00000092922.2, ENSXETT00000067573.2
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye

  4. XM_031901012.1 → XP_031756872.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A6I8PYN9, F7D922
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye

  5. XM_031901014.1 → XP_031756874.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A6I8PYN9, F7D922
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001079141.1: Suppressed sequence

    Description
    NM_001079141.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: AGL (GeneID:517397).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.