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adat2 adenosine deaminase, tRNA-specific 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780017, updated on 17-Aug-2024

Summary

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Official Symbol
adat2provided by Xenbase
Official Full Name
adenosine deaminase, tRNA-specific 2provided by Xenbase
Primary source
Xenbase:XB-GENE-963029
See related
Ensembl:ENSXETG00000009790
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
deadc1
Orthologs
human mouse all
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Genomic context

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See adat2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (64731762..64745960)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (67484597..67498751)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene alpha-L-fucosidase 2 Neighboring gene peroxisomal biogenesis factor 3 Neighboring gene androgen-induced 1 Neighboring gene human immunodeficiency virus type I enhancer binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC147564

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA-specific adenosine-34 deaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables tRNA-specific adenosine-34 deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA wobble adenosine to inosine editing IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within tRNA wobble adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tRNA-specific adenosine deaminase 2
Names
adenosine deaminase, tRNA-specific 2, TAD2 homolog
deaminase domain containing 1
deaminase domain-containing protein 1
tRNA-specific adenosine-34 deaminase subunit ADAT2
NP_001072562.1
XP_031757664.1
XP_031757665.1
XP_031757666.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079094.1 → NP_001072562.1  tRNA-specific adenosine deaminase 2

    See identical proteins and their annotated locations for NP_001072562.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122084
    UniProtKB/Swiss-Prot
    Q0P4H0
    UniProtKB/TrEMBL
    A0A803K1L1
    Related
    ENSXETP00000114203.1, ENSXETT00000106133.1
    Conserved Domains (1) summary
    COG0590
    Location:1 → 156
    TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64731762..64745960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901804.1 → XP_031757664.1  tRNA-specific adenosine deaminase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J1JKX1
    Conserved Domains (1) summary
    cd01285
    Location:14 → 104
    nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...

  2. XM_031901806.1 → XP_031757666.1  tRNA-specific adenosine deaminase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J1JM21
    Conserved Domains (1) summary
    cd01285
    Location:4 → 69
    nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...

  3. XM_031901805.1 → XP_031757665.1  tRNA-specific adenosine deaminase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J1JKX1
    Conserved Domains (1) summary
    cd01285
    Location:14 → 104
    nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0P4H0.1 GenPept UniProtKB/Swiss-Prot:Q0P4H0

Gene LinkOut

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