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chst8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779984, updated on 4-Nov-2024

Summary

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Official Symbol
chst8provided by Xenbase
Official Full Name
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8provided by Xenbase
Primary source
Xenbase:XB-GENE-987442
See related
Ensembl:ENSXETG00000016868 AllianceGenome:Xenbase:XB-GENE-987442
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable sulfotransferase activity. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Orthologous to human CHST8 (carbohydrate sulfotransferase 8). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See chst8 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (67996231..68255609, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (19849796..20109358, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene LSM14A mRNA processing body assembly factor Neighboring gene potassium channel tetramerization domain containing 15 Neighboring gene uncharacterized LOC116410406 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC146666

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 8
NP_001072529.1
XP_017948584.2
XP_017948585.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079061.1 → NP_001072529.1  carbohydrate sulfotransferase 8

    See identical proteins and their annotated locations for NP_001072529.1

    Status: PROVISIONAL

    Source sequence(s)
    BC121984
    UniProtKB/TrEMBL
    A0A6I8PMV5, Q0D2D0
    Related
    ENSXETP00000057424.4, ENSXETT00000057424.4
    Conserved Domains (1) summary
    pfam03567
    Location:200 → 429
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    67996231..68255609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018093095.2 → XP_017948584.2  carbohydrate sulfotransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SXI5, A0A803K9J2
    Related
    ENSXETP00000097972.2, ENSXETT00000100605.2
    Conserved Domains (1) summary
    pfam03567
    Location:184 → 413
    Sulfotransfer_2; Sulfotransferase family

  2. XM_018093096.2 → XP_017948585.2  carbohydrate sulfotransferase 8 isoform X2

    UniProtKB/TrEMBL
    A0A803K9J2, A0A8J0ST28
    Conserved Domains (1) summary
    pfam03567
    Location:152 → 381
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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