znf598 zinc finger protein 598 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: znf598provided by Xenbase
Official Full Name: zinc finger protein 598provided by Xenbase
Primary source: Xenbase:XB-GENE-999290
See related: Ensembl:ENSXETG00000022671 AllianceGenome:Xenbase:XB-GENE-999290
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary: Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to act upstream of or within rescue of stalled ribosome. Predicted to be located in cytoplasm. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (18741105..18755788, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (12858047..12878638, complement)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within rescue of stalled ribosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: E3 ubiquitin-protein ligase ZNF598

NP_001119543.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001126071.1 → NP_001119543.1 E3 ubiquitin-protein ligase ZNF598

See identical proteins and their annotated locations for NP_001119543.1

Status: PROVISIONAL

Source sequence(s)

BC166062

UniProtKB/TrEMBL

B2GTY7, F7E0X3

Related

ENSXETP00000049064.4, ENSXETT00000049064.5

Conserved Domains (1) summary

COG5236
Location:12 → 314

COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]