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gabrg2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779514, updated on 17-Aug-2024

Summary

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Official Symbol
gabrg2provided by Xenbase
Official Full Name
gamma-aminobutyric acid (GABA) A receptor, gamma 2provided by Xenbase
Primary source
Xenbase:XB-GENE-5949005
See related
Ensembl:ENSXETG00000023224
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
cae2; eca2; gabrg1; gefsp3
Orthologs
human mouse all
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Genomic context

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See gabrg2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (24551303..24617305)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (15483615..15547491)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid (GABA) A receptor, alpha 6 Neighboring gene gamma-aminobutyric acid (GABA) A receptor, alpha 1 Neighboring gene phosphatidylinositol polyphosphate 5-phosphatase type IV-like Neighboring gene uncharacterized transmembrane protein DDB_G0289901-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GABA-A receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables GABA-gated chloride ion channel activity IEA
Inferred from Electronic Annotation
more info
  
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
  
enables extracellular ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chloride transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within gamma-aminobutyric acid signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein heterotrimerization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of chloride channel complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gamma-aminobutyric acid receptor subunit gamma-2
Names
gamma-aminobutyric acid A receptor, gamma 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    24551303..24617305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031898735.1 → XP_031754595.1  gamma-aminobutyric acid receptor subunit gamma-2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q2M9, A0A6I8S9D3
    Related
    ENSXETP00000089263.1, ENSXETT00000086561.2

  2. XM_004912779.4 → XP_004912836.1  gamma-aminobutyric acid receptor subunit gamma-2 isoform X2

    UniProtKB/TrEMBL
    F6S370, F7DCK7
    Related
    ENSXETP00000044702.4, ENSXETT00000044702.5
    Conserved Domains (2) summary
    TIGR00860
    Location:99 → 494
    LIC; Cation transporter family protein
    cd19000
    Location:120 → 301
    LGIC_ECD_GABAAR_G; extracellular domain of gamma-aminobutyric acid receptor subunit gamma
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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