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plscr2.S phospholipid scramblase 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779421, updated on 4-Nov-2024

Summary

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Official Symbol
plscr2.S
Official Full Name
phospholipid scramblase 2 S homeolog
Primary source
Xenbase:XB-GENE-5819758
Locus tag
XELAEV_18029827mg
See related
EnsemblRapid:ENSXLAG00005003580 AllianceGenome:Xenbase:XB-GENE-5819758
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
plscr2
Summary
Predicted to enable phospholipid scramblase activity. Predicted to act upstream of or within plasma membrane phospholipid scrambling. Predicted to be located in plasma membrane. Orthologous to human PLSCR2 (phospholipid scramblase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See plscr2.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (108736716..108765284, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (101989150..102016804, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 S homeolog Neighboring gene phospholipid scramblase 1 Neighboring gene uncharacterized LOC121394083 Neighboring gene Zic family member 4 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154931

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables phospholipid scramblase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within plasma membrane phospholipid scrambling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phospholipid scramblase 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097039.1 → NP_001090508.1  phospholipid scramblase 2 S homeolog

    See identical proteins and their annotated locations for NP_001090508.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126054
    UniProtKB/TrEMBL
    A0JMY8
    Related
    ENSXLAP00005010684.1, ENSXLAT00005010850.1
    Conserved Domains (2) summary
    pfam02084
    Location:13 → 83
    Bindin; Bindin
    pfam03803
    Location:128 → 348
    Scramblase; Scramblase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    108736716..108765284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041564083.1 → XP_041420017.1  phospholipid scramblase 2 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A1L8G4F4, A0A974HI58
    Conserved Domains (2) summary
    PHA03378
    Location:29 → 129
    PHA03378; EBNA-3B; Provisional
    pfam03803
    Location:118 → 338
    Scramblase

  2. XM_041564082.1 → XP_041420016.1  phospholipid scramblase 2 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8G4F4, A0A974HI58
    Conserved Domains (2) summary
    PHA03378
    Location:29 → 129
    PHA03378; EBNA-3B; Provisional
    pfam03803
    Location:118 → 338
    Scramblase

  3. XM_041564081.1 → XP_041420015.1  phospholipid scramblase 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KRU5
    Conserved Domains (2) summary
    PHA03378
    Location:29 → 139
    PHA03378; EBNA-3B; Provisional
    pfam03803
    Location:128 → 348
    Scramblase
Nucleotide Protein Strain
Heading Accession and Version

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